PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG022516t1
Common NameTCM_022516
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bZIP
Protein Properties Length: 596aa    MW: 66190.2 Da    PI: 8.1724
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG022516t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_120.41.1e-06244301158
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                       eke +r rr   NRe+Ar   +R++a +e+L+ kv+ L+ eN+ Lk   e   ke+++
  Thecc1EG022516t1 244 EKEARRLRRILANRESARQTIRRRQALCEKLTLKVADLTRENENLKRAKELALKEYKS 301
                       799******************************************9544444455555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-6244308IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.714246309IPR004827Basic-leucine zipper domain
CDDcd147022.08E-12249299No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MDLERGLASS SLASTPGEAA EGAEAVTADQ MEMEAAEILA ALAHSKKRDA VAVAAKFSAK  60
WGCKGKRVSR RVSSSESPPS EIGLNQVDPV QSSSDLAEQD RAAVDQQQSQ VTSTPVVIES  120
IEAEQNSELL NGSHTCAARY TSKCVGKSRQ NAEKETLRLH RMLTNKESDW QMIRERQILY  180
SIMGMPEKDV WEDRQHDQMT GNDVLIKSVK AEQNAESVKS SPTCATKYMS GGGGRSRQNL  240
TEAEKEARRL RRILANRESA RQTIRRRQAL CEKLTLKVAD LTRENENLKR AKELALKEYK  300
SQESTNKHLK AQMVKAIKAE EGEAPRELKL AHQISGPSRN YPFYFYNQHP FPPFCWPSIV  360
QSSNPVQTQC EHQNAIVVSS SISAPTNGRL DSSHDQENPI NVNGPKTPLY VVPYPWFFSL  420
PDHGNELHLR PCCGPKNNKD ETSANNRFSA GCSLKSVVHE EKYNFSLPTE VEKEAYGSIE  480
ASSNNQNCTS VRLPSDGSVQ CIRYQIKEEV ILPTPLCSAG PTFVVEQENT PDVNTEAARV  540
RACHFVGALP EENQESTNYT TKKVLDAAAA AEARKRRKEL TKLKNLHGRQ CRTHR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1573578RKRRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027676.10.0Basic-leucine zipper transcription factor family protein, putative isoform 1
TrEMBLA0A061EU760.0A0A061EU76_THECC; Basic-leucine zipper transcription factor family protein, putative isoform 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112112428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.18e-56bZIP family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]